Create a plot with founder effects for a given phenotype

Usage

tailWag(
  effects,
  tissue,
  feat,
  chromosome,
  color = "#0073C2FF",
  psave = TRUE,
  pname = NULL,
  outdir = NULL,
  pop = "do",
  founders = NULL,
  symbol = TRUE
)

Arguments

effects: Effects object (output from qtl_effects function).
tissue: String indicating which tissue to plot the founder effects for.
feat: Individual phenotype to plot effects of.
chromosome: Chromosome that the peak is present on.
color: Plot color. Default is "#0073C2FF".
psave: Logical. Save the plot as .png. Default TRUE.
pname: File name to save plot (needs to end in .png). Default is wag_effects_<tissue>_<feat>.png
outdir: Directory to save plots. Default is NULL.
pop: One of c("do", "cc", "other") to indicate founder population. Default is "do".
founders: If pop == "other", list of founders in haplotype order.
symbol: Logical. The phenotype to be plotted is passed as a symbol instead of phenotype id. Default TRUE.

Value

ggplot object of the effects plot